PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 301aa    MW: 33440.9 Da    PI: 7.1418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018110132123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ Fs++  L  H++ H
  CA08g01310 110 FSCNFCKREFSTSQALGGHQNAH 132
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-6107137No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4107136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.198110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDVFAMKKSC SSEASSTSAT SEDSHEIITN AKKMKEKVVE VEECQLKPHV LSSSDVLLDI  60
EVHNDYKNKK NVSCLNHELN LFNSTQAGAS HESSNEATPK QNRSSDGRTF SCNFCKREFS  120
TSQALGGHQN AHKQERVLAK RRNKLDDMVS LFGPTNYHPY YNPYSSFNSH VPFHGSFATR  180
SLLGIQGDSS AIHKPSSYET WPFSSSYNFR SDPQKWSSSS SSSLFKTENI IGNNIHGASL  240
ENSLFTSKNN TKGFNLMDSS VNVNDNLGGK NYLKIGLGEE KAKKDNEEEE ESKLDLNLKL  300
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581617.10.0PREDICTED: zinc finger protein 3-like
TrEMBLM1C3041e-132M1C304_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000586251e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-24C2H2 family protein